PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf04749g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WOX
Protein Properties Length: 222aa    MW: 25567.5 Da    PI: 9.7433
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf04749g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.3e-201172157
                              TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox  1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              r +R+++t+eql  Lee+++k  r+p+a++++ ++++l    +++ ++V++WFqN++a++++
  Peinf101Scf04749g00003.1 11 RPTRWSPTPEQLMLLEEMYRKgLRNPNATQIQNITAHLscygKIEGKNVFYWFQNHKARDRQ 72
                              569*****************99*************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.851873IPR001356Homeobox domain
SMARTSM003892.0E-61077IPR001356Homeobox domain
SuperFamilySSF466891.75E-111173IPR009057Homeodomain-like
PfamPF000468.3E-181172IPR001356Homeobox domain
CDDcd000864.36E-51173No hitNo description
Gene3DG3DSA:1.10.10.603.0E-71472IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSHLKREKMT RPTRWSPTPE QLMLLEEMYR KGLRNPNATQ IQNITAHLSC YGKIEGKNVF  60
YWFQNHKARD RQKLKKKLLA QMNQQQILAQ HHPVDAHSTT NNSLFQLPEY SHNSSSVVNQ  120
ICPFTSTTGF LQEGGIKEAS PRVMTYLYPM DLSRPSEMEN CMVRPYGKDW ILMMNITPPL  180
PCNVNDRPLK TLPLFPITTT STLKDQSIIT STMENNVVLS LS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6281720.0FJ628172.1 Petunia x hybrida cultivar W138 WOX3 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009618151.11e-111PREDICTED: WUSCHEL-related homeobox 3-like
RefseqXP_016464869.11e-111PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLC9WKA61e-165C9WKA6_PETHY; WOX3 protein
STRINGSolyc11g072790.1.19e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29591951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.19e-40WOX family protein